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Microbial Function and Application in Marine Recirculating Aquaculture Systems |
SUN Yongxin1, TIAN Bin2, REN Tongjun3, LIU Xianjie4, WANG Qingzhi1 |
1. Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science ResearchInstitute, Dalian 116023, China; 2. Dalian Modern Agricultural Production Development Service Center, Dalian 116023,China; 3. College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China; 4. College ofInnovation and Entrepreneurship, Dalian Ocean University, Dalian 116023, China |
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[1]Food and Agriculture Organization of the United Nations. The State of World Fisheries and Aquaculture: sustainability in action [R]. Rome: FAO, 2020:6. [2]ZOHAR Y, TAL Y, SCHREIER H J, et al. Commercially feasible urban recirculating aquaculture:addressing the marine sector[M]//COSTA-PIERCE B, DESBONNET A, EDWARDS P, et al. Urban aquaculture. Wallingford: CABI,2005:159-171. [3]TAL Y, SCHREIER H J, SOWERS K R, et al. Environmentally sustainable land-based marine aquaculture[J].Aquaculture,2009,286(1/2):28-35. [4]GELFAND I, BARAK Y, EVEN-CHEN Z, et al. A novel zero discharge intensive seawater recirculating system for the culture of marine fish[J].Journal of the World Aquaculture Society,2003,34(3):344-358. [5]KELLER M, ZENGLER K. Tapping into microbial diversity[J].Nature Reviews.Microbiology,2004,2(2):141-150. [6]SHNEL N, BARAK Y, EZER T, et al. Design and performance of a zero-discharge tilapia recirculating system[J].Aquacultural Engineering,2002,26(3):191-203. [7]AVNIMELECH Y. Bio-filters:the need for an new comprehensive approach[J].Aquacultural Engineering,2006,34(3):172-178. [8]GUTIERREZ-WING M T, MALONE R F. Biological filters in aquaculture:trends and research directions for freshwater and marine applications[J].Aquacultural Engineering,2006,34(3):163-171. [9]EDING E H, KAMSTRA A, VERRETH J A J, et al. Design and operation of nitrifying trickling filters in recirculating aquaculture:a review[J].Aquacultural Engineering,2006,34(3):234-260. [10]GAO Y D, GUO L, SHAO M Y, et al. Denitrification performance evaluation and kinetics analysis with mariculture solid wastes (MSW) derived carbon source in marine recirculating aquaculture systems (RAS)[J].Bioresource Technology,2020,313:123649. [11]STICKNEY R R. Recirculating water systems[M]//Encyclopedia of Aquaculture. STICKNEY R R. New York: Wiley,2000:722-731. [12]FOESEL B U, GIESEKE A, SCHWERMER C, et al. Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm[J].FEMS Microbiology Ecology,2008,63(2):192-204. [13]PAUNGFOO C, PRASERTSAN P, BURRELL P C, et al. Nitrifying bacterial communities in an aquaculture wastewater treatment system using fluorescence in situ hybridization (FISH), 16S rRNA gene cloning, and phylogenetic analysis[J].Biotechnology and Bioengineering,2007,97(4):985-990. [14]TAL Y, WATTS J E M, SCHREIER S B, et al. Characterization of the microbial community and nitrogen transformation processes associated with moving bed bioreactors in a closed recirculated mariculture system[J].Aquaculture,2003,215(1/2/3/4):187-202. [15]FOESEL B U, GÖSSNER A S, DRAKE H L, et al. Geminicoccus roseus gen.nov., sp.nov., an aerobic phototrophic Alphaproteobacterium isolated from a marine aquaculture biofilter[J].Systematic and Applied Microbiology,2007,30(8):581-586. [16]HOVANEC T A, DELONG E F. Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria[J].Applied and Environmental Microbiology,1996,62(8):2888-2896. [17]CYTRYN E, MINZ D, GELFAND I, et al. Sulfide-oxidizing activity and bacterial community structure in a fluidized bed reactor from a zero-discharge mariculture system[J].Environmental Science & Technology,2005,39(6):1802-1810. [18]CYTRYN E, VAN RIJN J, SCHRAMM A, et al. Identification of bacteria potentially responsible for oxic and anoxic sulfide oxidation in biofilters of a recirculating mariculture system[J].Applied and Environmental Microbiology,2005,71(10):6134-6141. [19]BORGES M T, SOUSA A, DE MARCO P, et al. Aerobic and anoxic growth and nitrate removal capacity of a marine denitrifying bacterium isolated from a recirculation aquaculture system[J].Microbial Ecology,2008,55(1):107-118. [20]MICHAUD L, LO GIUDICE A, TROUSSELLIER M, et al. Phylogenetic characterization of the heterotrophic bacterial communities inhabiting a marine recirculating aquaculture system[J].Journal of Applied Microbiology,2009,107(6):1935-1946. [21]LEONARD N, BLANCHETON J P, GUIRAUD J P. Populations of heterotrophic bacteria in an experimental recirculating aquaculture system[J].Aquacultural Engineering,2000,22(1/2):109-120. [22]CYTRYN E, GELFAND I, BARAK Y, et al. Diversity of microbial communities correlated to physiochemical parameters in a digestion basin of a zero-discharge mariculture system[J].Environmental Microbiology,2003,5(1):55-63. [23]LAHAV O, MASSADA I B, YACKOUBOV D, et al. Quantification of anammox activity in a denitrification reactor for a recirculating aquaculture system[J].Aquaculture,2009,288(1/2):76-82. [24]ZHU P, YE Y F, PEI F F, et al. Characterizing the structural diversity of a bacterial community associated with filter materials in recirculating aquaculture systems of Scortum barcoo[J].Canadian Journal of Microbiology,2012,58(3):303-310. [25]黄志涛,宋协法,李勋,等.基于高通量测序的石斑鱼循环水养殖生物滤池微生物群落分析[J].农业工程学报,2016,32(增刊):242-247. [26]TAL Y, WATTS J E M, SCHREIER H J. Anaerobic ammonium-oxidizing (anammox) bacteria and associated activity in fixed-film biofilters of a marine recirculating aquaculture system[J].Applied and Environmental Microbiology,2006,72(4):2896-2904. [27]STICKNEY R R.Nitrogen[M]//Encyclopedia of Aquaculture. STICKNEY R R. New York: Wiley,2000:586-590. [28]PEDERSEN L F, PEDERSEN P B, NIELSEN J L, et al. Peracetic acid degradation and effects on nitrification in recirculating aquaculture systems[J].Aquaculture,2009,296(3/4):246-254. [29]SCHREIER H J, TAL Y, MORRISON M M. Stimulating denitrification in a marine recirculating aquaculture system biofilter using granular starch as a carbon source[J].International Journal of Recirculating Aquaculture,2008,9(1):23-41. [30]张兰河,刘丽丽,仇天雷,等.以聚羟基丁酸戊酸共聚酯为碳源去除循环水养殖系统的硝酸盐及生物膜中微生物群落动态[J].微生物学报,2014,54(9):1053-1062. [31]WIETZ M, HALL M R, HØJ L. Effects of seawater ozonation on biofilm development in aquaculture tanks[J].Systematic and Applied Microbiology,2009,32(4):266-277. [32]SHER Y, SCHNEIDER K, SCHWERMER C U, et al. Sulfide-induced nitrate reduction in the sludge of an anaerobic digester of a zero-discharge recirculating mariculture system[J].Water Research,2008,42(16):4386-4392. [33]PAREDES D, KUSCHK P, MBWETTE T S A, et al. New aspects of microbial nitrogen transformations in the context of wastewater treatment: a review[J].Engineering in Life Sciences,2007,7(1):13-25. [34]KALYUZHNYI S, GLADCHENKO M, MULDER A, et al. DEAMOX—New biological nitrogen removal process based on anaerobic ammonia oxidation coupled to sulphide-driven conversion of nitrate into nitrite[J].Water Research,2006,40(19):3637-3645. [35]STROUS M, HEIJNEN J J, KUENEN J G, et al. The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms[J].Applied Microbiology and Biotechnology,1998,50(5):589-596. [36]SCHMIDT I, SLIEKERS O, SCHMID M, et al. New concepts of microbial treatment processes for the nitrogen removal in wastewater[J].FEMS Microbiology Reviews,2003,27(4):481-492. [37]MIRZOYAN N, PARNES S, SINGER A, et al. Quality of brackish aquaculture sludge and its suitability for anaerobic digestion and methane production in an upflow anaerobic sludge blanket (UASB) reactor[J].Aquaculture,2008,279(1/2/3/4):35-41. [38]URAKAWA H, TAJIMA Y, NUMATA Y, et al. Low temperature decreases the phylogenetic diversity of ammonia-oxidizing Archaea and bacteria in aquarium biofiltration systems[J].Applied and Environmental Microbiology,2008,74(3):894-900. [39]赵越.海水生物滤器工艺设计及其微生物菌群研究[D].青岛:中国科学院大学(中国科学院海洋研究所),2018. [40]LI J P, ELLIOTT D, NIELSEN M, et al. Long-term partial nitrification in an intermittently aerated sequencing batch reactor (SBR) treating ammonium-rich wastewater under controlled oxygen-limited conditions[J].Biochemical Engineering Journal,2011,55(3):215-222. [41]GUTTMAN L, VAN RIJN J. Identification of conditions underlying production of geosmin and 2-methylisoborneol in a recirculating system[J].Aquaculture,2008,279(1/2/3/4):85-91. [42]ITOI S, EBIHARA N, WASHIO S, et al. Nitrite-oxidizing bacteria, Nitrospira, distribution in the outer layer of the biofilm from filter materials of a recirculating water system for the goldfish Carassius auratus[J].Aquaculture,2007,264(1/2/3/4):297-308. [43]TRINGE S G, VON MERING C, KOBAYASHI A, et al. Comparative metagenomics of microbial communities[J].Science,2005,308(5721):554-557. [44]SUGITA H, NAKAMURA H, SHIMADA T. Microbial communities associated with filter materials in recirculating aquaculture systems of freshwater fish[J].Aquaculture,2005,243(1/2/3/4):403-409. [45]SHARRER M J, SUMMERFELT S T, BULLOCK G L, et al. Inactivation of bacteria using ultraviolet irradiation in a recirculating salmonid culture system[J].Aquacultural Engineering,2005,33(2):135-149. [46]KING R K, FLICK G J, PIERSON D, et al. Identification of bacterial pathogens in biofilms of recirculating aquaculture systems[J].Journal of Aquatic Food Product Technology,2004,13(1):125-133. [47]DEFOIRDT T, BOON N, SORGELOOS P, et al. Quorum sensing and quorum quenching in Vibrio harveyi:lessons learned from in vivo work[J].The ISME Journal,2008,2(1):19-26. [48]DEFOIRDT T, BOON N, SORGELOOS P, et al. Alternatives to antibiotics to control bacterial infections:luminescent vibriosis in aquaculture as an example[J].Trends in Biotechnology,2007,25(10):472-479. [49]KESARCODI-WATSON A, KASPAR H, LATEGAN M J, et al. Probiotics in aquaculture:the need, principles and mechanisms of action and screening processes[J].Aquaculture,2008,274(1):1-14. [50]BRUHN J B, NIELSEN K F, HJELM M, et al. Ecology, inhibitory activity, and morphogenesis of a marine antagonistic bacterium belonging to the Roseobacter clade[J].Applied and Environmental Microbiology,2005,71(11):7263-7270. [51]陈珠.红鳍东方鲀循环水养殖系统生物滤池内可培养微生物的多样性研究[D].青岛:中国科学院研究生院(海洋研究所),2013. [52]吴越,马建忠,郑伊诺,等.石斑鱼循环水养殖系统微生物群落结构[J].中国水产科学,2017,24(5):1045-1054. [53]MARTINS P, CLEARY D F R, PIRES A C C, et al。 Molecular analysis of bacterial communities and detection of potential pathogens in a recirculating aquaculture system for Scophthalmus maximus and Solea senegalensis[J].PLoS One,2013,8(11):e80847. [54]吴建绍,朱志煌,李雷斌,等.双斑东方鲀循环水养殖水体细菌群落结构分析[J].渔业研究,2018,40(4):249-257. [55]侯婷婷,钟志平,刘缨,等.青石斑鱼海水循环水养殖水体的细菌群落特征[J].微生物学报,2016,56(2):253-263. [56]罗金飞,廖永岩,李书迪,等.温度对拟穴青蟹循环水养殖系统微生物群落结构的影响[J].中国水产科学,2020,27(4):393-405. [57]秦宇,郭劲松,方芳,等.溶解氧及曝停比对单级自养脱氮系统微生物群落结构的影响[J].环境科学,2009,30(2):493-498. [58]DOWNING L S, NERE R. Nitrification in the activated sludge process[J].Journal and Proceedings of the Institute of Sewage Purification,1964,63:130-158. [59]ALLEMAN J E.Elevated nitrite occurrence in biological wastewater treatment systems[J].Water Science and Technology,1985,17(2/3):409-419. [60]王新为,孔庆鑫,金敏,等.pH值与曝气对硝化细菌硝化作用的影响[J].解放军预防医学杂志,2003,21(5):319-322. [61]侯婷婷.海水循环水养殖水体细菌群落分析[D].北京:中国科学院大学,2015. [62]COTTRELL M T, KIRCHMAN D L. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter[J].Applied and Environmental Microbiology,2000,66(4):1692-1697. [63]KIRCHMAN D L. The ecology of Cytophaga-Flavobacteria in aquatic environments[J].FEMS Microbiology Ecology,2002,39(2):91-100. [64]WAWRIK B, BOLING W B, VAN NOSTRAND J D, et al. Assimilatory nitrate utilization by bacteria on the West Florida Shelf as determined by stable isotope probing and functional microarray analysis[J].FEMS Microbiology Ecology,2012,79(2):400-411. [65]吴凡,刘晃,宿墨.工厂化循环水养殖的发展现状与趋势[J].科学养鱼,2008(9):72-74. [66]孙龙启,刘慧.国内外循环水养殖专利分析及启示[J].中国工程科学,2016,18(3):115-120. [67]朱建新,刘慧,徐勇,等.循环水养殖系统生物滤器负荷挂膜技术[J].渔业科学进展,2014,35(4):118-124. [68]朱建新,曲克明,王彦怀,等.节约型海水鱼类循环水养殖车间工艺设计[J].水产前沿,2012(5): 52-55. [69]刘鹰,刘宝良.我国海水工业化养殖面临的机遇和挑战[J].渔业现代化,2012,39(6):1-4. [70]刘鹰.海水工业化循环水养殖技术研究进展[J].中国农业科技导报,2011,13(5):50-53. [71]孙建明,吴垠,吴斌.变流式循环水养殖方法:CN10 1664010A[P].2010-03-10. [72]杨菁,倪琦,张宇雷,等.对虾工程化循环水养殖系统构建技术[J].农业工程学报,2010,26(8):136-140. [73]宋奔奔,倪琦,张宇雷,等.臭氧对大菱鲆半封闭循环水养殖系统水质净化研究[J].渔业现代化,2011,38(6):11-15. [74]李林春,陈方平,阎希柱,等.节能型循环水养殖系统的构建与生产成本分析[J].渔业现代化,2012,39(5):11-15. [75]吴垠,孙建明,柴雨,等.多层抽屉式循环水幼鲍养殖系统及养殖效果[J].农业工程学报,2012,28(13):185-190. [76]张洪,马妮娜,刘建立,等.循环水抽屉式立体养殖系统养殖马粪海胆研究[J].渔业现代化,2009,36(2):7-11. [77]赵景丽,王际英,张利民,等.循环水养殖系统水质净化设施设计与建造技术[J].渔业现代化,2013,40(3):10-13. [78]孙建明,邱天龙,吴斌,等.一种循环水养殖系统间歇式回水装置及其回水工艺:CN107182893A[P].2017-09-22. [79]徐建平,周利,邱天龙,等.电絮凝-过滤技术去除海水养殖水体中污染物的研究[J].渔业现代化,2020,47(6):26-34. [80]BLANCHETON J P. Developments in recirculation systems for Mediterranean fish species[J].Aquacultural Engineering,2000,22(1/2):17-31. [81]BERGHEIM A, DRENGSTIG A, ULGENES Y, et al. Production of Atlantic salmon smolts in Europe—Current characteristics and future trends[J].Aquacultural Engineering,2009,41(2):46-52. [82]刘晃,张宇雷,吴凡,等.美国工厂化循环水养殖系统研究[J].农业开发与装备,2009(5):10-13. [83]王保刚.日本ICRAS公司考察行——近距离剖析日本新一代高效封闭循环水养殖系统[J].海洋与渔业·水产前沿,2016(3):14-16. |
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