Comparison and Analysis of Genetic Parameters of Growth Traits in Yellow River Common Carp Cyprinus carpio haematopterus Estimatied by Different Models
WANG Yanhui, WANG Bingke, QU Changyi, FENG Jianxin, CHANG Dongzhou, ZHANG Qin
Henan Academy of Fishery Sciences, Zhengzhou 450044, China
Abstract：To evaluate the genetic parameters of growth traits of Yellow River common carp Cyprinus carpiohaematopterus more accurately, we used seven microsatellite loci to genotype parents and offspring of a communal reared population of Yellow River common carp and utilized the genotyping information to carry out the parentage assignment. Then, the genetic parameters of body weight (BW) and body length (BL) for 20-month-old Yellow River common carp were estimated based on the average information restricted maximum likelihood (AIREML) method. Considering the possible non-additive genetic effects, three animal models were constructed as below: Model A only included the additive genetic effect; Model AM contained the additive genetic and maternal genetic effects; Model AF includeed the additive genetic effects and the full-sib family effects. The significance of difference among the three models was analyzed with the likelihood ratio test. The result of genotyping revealed that all of the loci showed high polymorphism. Sixty-four alleles were detected in 7 microsatellite loci, and the number of alleles in each locus was 5—11, and the average number of alleles in each locus in offspring population was 9.10, and the average observed heterozygosity was 0.795. The average expected heterozygosity was 0.801, and the moderate polymorphism information content was 0.771. The result of the model analysis showd that the Model AM was the optimal model. At 20 months of age, BW and BL showed a high level of heritability of 0.46 and 0.41, respectively, and maternal genetic effects ratio of 0.14 and 0.11, respectively. Phenotypic and genetic correlations between BW and BL were positive and ranged from 0.75 to 0.85. The results suggested that maternal effect was considered in the genetic parameter evaluation model of growth traits of Yellow River common carp at 20-month-old. Combined with the analysis of relative genetic advances, BW as the target trait effectively improved the growth performance in common carp. The finding provides a theoretical basis and technical support for selective breeding of growth traits in common carp.
王延晖, 王冰柯, 屈长义, 冯建新, 常东洲, 张芹. 不同模型估计黄河鲤生长性状遗传参数的比较分析[J]. 水产科学, 2023, 42(3): 377-385.
WANG Yanhui, WANG Bingke, QU Changyi, FENG Jianxin, CHANG Dongzhou, ZHANG Qin. Comparison and Analysis of Genetic Parameters of Growth Traits in Yellow River Common Carp Cyprinus carpio haematopterus Estimatied by Different Models. Fisheries Science, 2023, 42(3): 377-385.
[1]谢元澄,李欣原,苏胜彦,等.基于黄河鲤新品系IGF2b基因SNPs获取体系的建立及在该品系选育中的应用[J].中国水产科学,2019,26(4):686-694. [2]WANG J Y, CHEN L, LI B J, et al. Performance of genome prediction for morphological and growth-related traits in Yellow River carp[J].Aquaculture,2021,536:736463. [3]BANG A, GRØNKJÆR P, CLEMMESEN C, et al. Parental effects on early life history traits of Atlantic herring (Clupea harengus L.) larvae[J].Journal of Experimental Marine Biology and Ecology,2006,334(1):51-63. [4]黄伟卿,韩坤煌,陈仕玺,等.海捕野生大黄鱼选育子代生长性能及现实遗传力分析[J].水产科学,2016,35(3):204-209. [5]蒋湘,郑静静,谢妙,等.日本囊对虾耐高氨氮与生长性状的遗传参数估计[J].水产科学,2017,36(6):700-706. [6]李仰真,杨英明,刘洋,等.牙鲆“鲆优2号”不同养殖地点生长和存活性状的基因型与环境互作分析[J].水产学报,2020,44(3):429-435. [7]李之乡,王伟继,胡玉龙,等.4月龄大菱鲆苗种耐氨氮性状的遗传参数评估[J].中国海洋大学学报(自然科学版),2018,48(3):48-54. [8]韦信键,刘贤德,王志勇.32个大黄鱼家系早期阶段生长性状比较及遗传参数估计[J].集美大学学报(自然科学版),2013,18(5):321-328. [9]傅建军,张猛,沈玉帮,等.草鱼幼鱼生长性状和肌肉成分的遗传参数估计[J].水产学报,2015,39(12):1780-1787. [10]LIU Y X, WANG G X, WANG Y F, et al. Estimation of genetic parameters for growth traits of Japanese flounder Paralichthys olivaceus using an animal model[J].Fisheries Science,2011,77(1):87-93. [11]卢薛,孙际佳,王海芳,等.鳜鱼生长性状遗传参数的估计[J].中国水产科学,2016,23(6):1268-1278. [12]姜鹏,韩林强,白俊杰,等.草鱼生长性状的遗传参数和育种值估计[J].中国水产科学,2018,25(1):18-25. [13]刘永新,刘海金.不同模型估计牙鲆家系间生长性状遗传参数的比较分析[J].渔业科学进展,2010,31(1):40-47. [14]张剑搏,袁超,岳耀敬,等.不同动物模型对高山美利奴羊早期生长性状遗传参数估计的比较[J].中国农业科学,2018,51(6):1202-1212. [15]张天时,栾生,孔杰,等.中国对虾体重育种值估计的动物模型分析[J].海洋水产研究,2008,29(3):7-13. [16]罗坤,孔杰,栾生,等.应用动物模型对罗氏沼虾育种值估计的差别分析[J].海洋水产研究,2008,29(3):85-91. [17]VANDEPUTTE M, HAFFRAY P. Parentage assignment with genomic markers:a major advance for understanding and exploiting genetic variation of quantitative traits in farmed aquatic animals[J].Frontiers in Genetics,2014,5:432. [18]刘永新,周勤,张红涛,等.基于标记系谱的红鳍东方鲀生长性状遗传分析[J].水产学报,2017,41(1):21-30. [19]PALAIOKOSTAS C, KOCOUR M, PRCHAL M, et al. Accuracy of genomic evaluations of juvenile growth rate in common carp (Cyprinus carpio) using genotyping by sequencing[J].Frontiers in Genetics,2018,9:82. [20]王新华,俞小牧,冯建新,等.黄河鲤全同胞家系的微卫星标记亲子鉴定[J].中国水产科学,2016,23(5):1023-1031. [21]KALINOWSKI S T, TAPER M L, MARSHALL T C. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment[J].Molecular Ecology,2007,16(5):1099-1106. [22]MISZTAL I, TSURUTA S, STRABEL T, et al. BLUPF90 and related programs (BGF90) [C]. Montpellier:Proceedings of the 7th World Congress on Genetics Applied to Livestock Production,2002:21-22. [23]NINH N H, PONZONI R W, NGUYEN N H, et al. A comparison of communal and separate rearing of families in selective breeding of common carp (Cyprinus carpio):estimation of genetic parameters[J].Aquaculture,2011,322/323:39-46. [24]孙坤,李旭鹏,隋娟,等.基于微卫星标记评估凡纳滨对虾收获体长、体质量以及抗WSSV性状的遗传参数[J].水产学报,2022,46(4):583-593. [25]LUO W, ZENG C, DENG W, et al. Genetic parameter estimates for growth-related traits of blunt snout bream (Megalobrama amblycephala) using microsatellite-based pedigree[J].Aquaculture Research,2013,45:1881-1888. [26]王军.基于SSR标记的中国对虾抗WSSV性状遗传参数估计及野生和选育群体的遗传多样性分析[D].上海:上海海洋大学,2017. [27]LYU D, WANG W J, LUAN S, et al. Estimating genetic parameters for growth traits with molecular relatedness in turbot (Scophthalmus maximus, Linnaeus)[J].Aquaculture,2017,468:149-155. [28]WANG C H, LI S F, XIANG S P, et al. Additive, dominance genetic effects for growth-related traits in common carp, Cyprinus carpio L[J].Aquaculture Research,2006,37(14):1481-1486. [29]ZHANG C Y, ZHANG Y, XU D Q, et al. Genetic and phenotypic parameter estimates for growth traits in Boer goat[J].Livestock Science,2009,124(1/2/3):66-71. [30]FU J J, SHEN Y B, XU X Y, et al. Genetic parameter estimates for growth of grass carp, Ctenopharyngodon idella, at 10 and 18 months of age[J].Aquaculture,2016,450:342-348. [31]刘永新,周勤,张红涛,等.红鳍东方鲀(Takifugu rubripes)生长性状的遗传参数估计[J].渔业科学进展,2014,35(6):39-44. [32]田永胜,李祥孔,段会敏,等.星斑川鲽家系建立及遗传效应分析[J].海洋学报,2016,38(6):21-31. [33]WANG C H. Quantitative genetic estimates of growth-related traits in the common carp (Cyprinus carpio L.):a review[J].Frontiers of Biology in China,2009,4(3):298-304. [34]VANDEPUTTE M. Selective breeding of quantitative traits in the common carp (Cyprinus carpio):a review[J].Aquatic Living Resources,2003,16(5):399-407. [35]KOCOUR M, MAUGER S, RODINA M, et al. Heritability estimates for processing and quality traits in common carp (Cyprinus carpio L.) using a molecular pedigree[J].Aquaculture,2007,270(1/2/3/4):43-50. [36]NIELSEN H M, ØDEGÅRD J, OLESEN I, et al. Genetic analysis of common carp (Cyprinus carpio) strains[J].Aquaculture,2010,304(1/2/3/4):14-21. [37]VANDEPUTTE M, KOCOUR M, MAUGER S, et al. Genetic variation for growth at one and two summers of age in the common carp (Cyprinus carpio L.):heritability estimates and response to selection[J].Aquaculture,2008,277(1/2):7-13. [38]HU X S, LI C T, SHANG M, et al. Inheritance of growth traits in Songpu mirror carp (Cyprinus carpio L.) cultured in Northeast China[J].Aquaculture,2017,477:1-5. [39]DONG Z J, NGUYEN N H, ZHU W B. Genetic evaluation of a selective breeding program for common carp Cyprinus carpio conducted from 2004 to 2014[J].BMC Genetics,2015,16:94. [40]HAFFRAY P, VANDEPUTTE M, PETIT V, et al. Minimizing maternal effect in salmonid families mixed since eyed stages and a posteriori DNA-pedigreed[J].Livestock Science,2012,150(1/2/3):170-178. [41]WANG C H, LI S F, XIANG S P, et al. Genetic parameter estimates for growth-related traits in Oujiang color common carp (Cyprinus carpio var. color)[J].Aquaculture,2006,259(1/2/3/4):103-107.
2023, Vol. 42 
